GO page  


GO term
GO:0009409
Description
response to cold
Type
BP
GO depth
3
Number of genes
3009
 

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Index of genes with 1 constraints:

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Page 1 of 151, showing 20 records out of 3009 total, starting on record 1, ending on 20

gene_id species description comment go evidence
AT2G27020 ath Encodes 20S proteasome alpha 7 subunit PAG1.;20S proteasome alpha subunit G1 transcript=eq;prot=eq; GO:0009409 IEP
AT5G02500 ath encodes a member of heat shock protein 70 family.;heat shock cognate protein 70-1 transcript=eq;prot=eq; GO:0009409 IEP
AT1G53240 ath Lactate/malate dehydrogenase family protein; FUNCTIONS IN: malate dehydrogenase activity, copper ion binding; INVOLVED IN: response to cadmium ion, response to salt stress, response to cold, defense response to bacterium, peptidyl-cysteine S-nitrosylation; LOCATED IN: mitochondrion, cell wall, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT3G15020.1); Has 17502 Blast hits to 17499 proteins in 5422 species: Archae - 240; Bacteria - 12205; Metazoa - 1281; Fungi - 536; Plants - 649; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink).;Lactate/malate dehydrogenase family protein transcript=eq;prot=eq; GO:0009409 IEP
AT1G16880 ath uridylyltransferase-related; INVOLVED IN: response to cold; LOCATED IN: chloroplast thylakoid membrane, stromule, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: ACT domain-containing protein (TAIR:AT5G04740.1); Has 499 Blast hits to 450 proteins in 72 species: Archae - 0; Bacteria - 103; Metazoa - 0; Fungi - 0; Plants - 340; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).;uridylyltransferase-related transcript=eq;prot=eq; GO:0009409 IEP
AT3G16470 ath JA-responsive gene;Mannose-binding lectin superfamily protein transcript=eq;prot=eq; GO:0009409 IEP
AT1G55920 ath Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system.;serine acetyltransferase 2;1 transcript=eq;prot=eq; GO:0009409 IEP
AT3G16460 ath Mannose-binding lectin superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: response to cold; LOCATED IN: cytosol, nucleus, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein 1 (TAIR:AT1G52040.1); Has 154784 Blast hits to 42550 proteins in 2542 species: Archae - 433; Bacteria - 67678; Metazoa - 26922; Fungi - 9328; Plants - 12326; Viruses - 2371; Other Eukaryotes - 35726 (source: NCBI BLink).;Mannose-binding lectin superfamily protein transcript=eq;prot=eq; GO:0009409 IEP
AT3G16450 ath Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to zinc ion, response to cold; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.04 four leaves visible, seedling growth; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: myrosinase-binding protein-like protein-300B (TAIR:AT3G16440.1); Has 1665 Blast hits to 784 proteins in 42 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 2; Plants - 1654; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).;Mannose-binding lectin superfamily protein transcript=eq;prot=eq; GO:0009409 IEP
AT4G24190 ath encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues.;Chaperone protein htpG family protein transcript=eq;prot=eq; GO:0009409 IEP
AT4G16845 ath The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis, vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants, FLC expression is downregulated normally in response to vernalization, but instead of remaining low, FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment, serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3;VEFS-Box of polycomb protein transcript=eq;prot=eq; GO:0009409 IEP
AT5G64860 ath Encodes a maltotriose-metabolizing enzyme with chloroplastic α-1,4-glucanotransferase activity. Mutant has altered starch degradation.;disproportionating enzyme transcript=eq;prot=eq; GO:0009409 IEP
AT4G24960 ath Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Along with other members of the ATHVA22 family, it may be involved in regulation of autophagy during development.;HVA22 homologue D transcript=eq;prot=eq; GO:0009409 IEP
AT2G17870 ath Encodes COLD SHOCK DOMAIN PROTEIN 3 (CSP3), involved in the acquisition of freezing tolerance.;cold shock domain protein 3 transcript=eq;prot=eq; GO:0009409 IMP
AT2G17840 ath Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.;Senescence/dehydration-associated protein-related transcript=eq;prot=eq; GO:0009409 IEP
AT2G38470 ath Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.;WRKY DNA-binding protein 33 transcript=eq;prot=eq; GO:0009409 IEP
AT3G55990 ath Encodes ESK1 (Eskimo1). A member of a large gene family of DUF231 domain proteins whose members encode a total of 45 proteins of unknown function. ESK1 functions as a negative regulator of cold acclimation. Mutations in the ESK1 gene provides strong freezing tolerance. A member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).;Plant protein of unknown function (DUF828) transcript=eq;prot=eq; GO:0009409 IMP
AT5G20830 ath Encodes a protein with sucrose synthase activity (SUS1).;sucrose synthase 1 transcript=eq;prot=eq; GO:0009409 IEP
AT3G49910 ath Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L26, eukaryotic/archaeal (InterPro:IPR005756), Ribosomal protein L24, SH3-like (InterPro:IPR014723), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G67510.1); Has 1113 Blast hits to 1113 proteins in 414 species: Archae - 314; Bacteria - 5; Metazoa - 375; Fungi - 141; Plants - 96; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).;Translation protein SH3-like family protein transcript=eq;prot=eq; GO:0009409 IEP
AT2G33800 ath Ribosomal protein S5 family protein; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cadmium ion, response to cold, translation; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S5, N-terminal (InterPro:IPR013810), Double-stranded RNA-binding-like (InterPro:IPR014720), Ribosomal protein S5, C-terminal (InterPro:IPR005324), Ribosomal protein S5, bacterial-type (InterPro:IPR005712), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 (InterPro:IPR000851), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), Ribosomal protein S5, N-terminal, conserved site (InterPro:IPR018192); BEST Arabidopsis thaliana protein match is: Ribosomal protein S5 family protein (TAIR:AT1G64880.1); Has 8967 Blast hits to 8967 proteins in 2880 species: Archae - 262; Bacteria - 5121; Metazoa - 552; Fungi - 265; Plants - 165; Viruses - 0; Other Eukaryotes - 2602 (source: NCBI BLink).;Ribosomal protein S5 family protein transcript=eq;prot=eq; GO:0009409 IEP
AT3G55280 ath 60S ribosomal protein L23A (RPL23aB). Paralog of RPL23aA;ribosomal protein L23AB transcript=eq;prot=eq; GO:0009409 IEP
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