Gene Overview 
General information
- Gene id
- VVCG00020
- Species
- Vitis vinifera
- Transcript
- VVCG00020.1
- Coordinates
- 412 - 1473
- Strand
- negative
- Chromosome
- chloroplast
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000961 117 genes in 23 species
- Sub family
- ORTHO001130 41 genes in 23 species
- Duplication type
- Tandem duplicate
- Description
- psbA;photosystem II protein D1;protein_id=ABE47514.1;
- Comment
- transl_table11Protein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0032991 macromolecular complex C_Hunter 3 43 130 1.74773e-24 GO:0022900 electron transport chain C_Hunter 3 13 132 0.000000000000203692 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR005867 Photosystem II reaction centre protein PsbA/D1 IPR000484 Photosynthetic reaction centre, L/M