Gene Overview 
General information
- Gene id
- TC10G002450
- Species
- Theobroma cacao
- Transcript
- TC10G002450.1
- Coordinates
- 1418867 - 1423924
- Strand
- positive
- Chromosome
- Tc10
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000094 747 genes in 25 species
- Sub family
- ORTHO000961 44 genes in 22 species
- Comment
- RNAnameTc10_t002450GeneNameTc10_g002450transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0009987 cellular process C_Hunter 3 88 266 0.0000000000151999 GO:0065007 biological regulation C_Hunter 3 54 299 0.0000000000983928 GO:0005488 binding C_Hunter 4 77 324 0.000000397285 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR015943 WD40/YVTN repeat-like-containing domain IPR001680 WD40 repeat IPR019782 WD40 repeat 2 IPR017986 WD40-repeat-containing domain IPR011046 WD40 repeat-like-containing domain IPR019781 WD40 repeat, subgroup