Gene Overview 
General information
- Gene id
- TC10G000340
- Species
- Theobroma cacao
- Transcript
- TC10G000340.1
- Coordinates
- 235272 - 239132
- Strand
- negative
- Chromosome
- Tc10
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000009 2595 genes in 21 species
- Sub family
- ORTHO000012 254 genes in 15 species
- Duplication type
- Tandem duplicate
- Comment
- RNAnameTc10_t000340GeneNameTc10_g000340transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0009987 cellular process C_Hunter 1 19 34 0.000359402 GO:0050896 response to stimulus C_Hunter 3 55 260 0.0000000000000249421 GO:0009987 cellular process C_Hunter 3 88 266 0.0000000000151999 GO:0005488 binding C_Hunter 3 88 248 0.00000000386552 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR003591 Leucine-rich repeat, typical subtype IPR002182 NB-ARC IPR001611 Leucine-rich repeat IPR000767 Disease resistance protein