Gene Overview 
General information
- Gene id
- TC09G007720
- Species
- Theobroma cacao
- Transcript
- TC09G007720.1
- Coordinates
- 4522955 - 4530117
- Strand
- positive
- Chromosome
- Tc09
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000395 234 genes in 25 species
- Sub family
- ORTHO006823 24 genes in 17 species
- Duplication type
- Tandem duplicate and Block duplicate
- Comment
- RNAnameTc09_t007720GeneNameTc09_g007720transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0009987 cellular process C_Hunter 3 99 297 0.000000000000123502 GO:0008152 metabolic process C_Hunter 3 104 300 0.0000000000122716 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR013765 DNA recombination and repair protein RecA IPR006702 Uncharacterised protein family UPF0497, trans-membrane plant IPR014774 Circadian clock protein KaiC/DNA repair protein RadA IPR020588 DNA recombination/repair protein RecA/RadB, ATP-binding domain IPR020587 DNA recombination/repair protein RecA, monomer-monomer interface IPR003593 ATPase, AAA+ type, core IPR006459 Uncharacterised protein family UPF0497, trans-membrane plant subgroup