Gene Overview 
General information
- Gene id
- TC09G006640
- Species
- Theobroma cacao
- Transcript
- TC09G006640.1
- Coordinates
- 3847388 - 3849186
- Strand
- positive
- Chromosome
- Tc09
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000125 552 genes in 25 species
- Sub family
- ORTHO010592 18 genes in 17 species
- Comment
- RNAnameTc09_t006640GeneNameTc09_g006640transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0008152 metabolic process C_Hunter 3 104 300 0.0000000000122716 GO:0008152 metabolic process C_Hunter 3 94 274 0.000000000671372 GO:0005488 binding C_Hunter 3 87 246 0.0000000066192 GO:0008152 metabolic process C_Hunter 4 81 324 0.0000000000981054 GO:0008152 metabolic process C_Hunter 4 80 321 0.0000000012592 GO:0005488 binding C_Hunter 4 83 315 0.00000000135617 GO:0044464 cell part C_Hunter 4 87 321 0.00000000732079 GO:0005488 binding C_Hunter 4 76 327 0.00000306276 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR001344 Chlorophyll A-B binding protein