Gene Overview 
General information
- Gene id
- TC08G009010
- Species
- Theobroma cacao
- Transcript
- TC08G009010.1
- Coordinates
- 5225753 - 5227286
- Strand
- negative
- Chromosome
- Tc08
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000007 3000 genes in 25 species
- Sub family
- ORTHO001329 39 genes in 16 species
- Duplication type
- Block duplicate
- Comment
- RNAnameTc08_t009010GeneNameTc08_g009010transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0005488 binding C_Hunter 3 86 238 0.00000000225565 GO:0005488 binding C_Hunter 4 75 314 0.00000475322 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding IPR009057 Homeodomain-like IPR012287 Homeodomain-related IPR014778 Myb, DNA-binding IPR001005 SANT, DNA-binding IPR015495 Myb transcription factor