Gene Overview 
General information
- Gene id
- TC06G001170
- Species
- Theobroma cacao
- Transcript
- TC06G001170.1
- Coordinates
- 724989 - 729448
- Strand
- positive
- Chromosome
- Tc06
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000182 407 genes in 14 species
- Sub family
- ORTHO007868 22 genes in 4 species
- Duplication type
- Tandem duplicate and Block duplicate
- Comment
- RNAnameTc06_t001170GeneNameTc06_g001170transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0007165 signal transduction C_Hunter 1 12 42 0.00000000112198 GO:0005515 protein binding C_Hunter 1 21 74 0.00000166156 GO:0007165 signal transduction C_Hunter 3 12 42 0.00000000112198 GO:0005515 protein binding C_Hunter 3 24 91 0.000000381702 GO:0005488 binding C_Hunter 3 61 176 0.0000661129 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR002219 Protein kinase C-like, phorbol ester/diacylglycerol binding IPR001965 Zinc finger, PHD-type IPR011424 C1-like