Gene Overview  


General information


Gene id
TC05G005750
Species
Theobroma cacao
Transcript
TC05G005750.1
Coordinates
3067467 - 3068723
Strand
positive
Chromosome
Tc05
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000982   115 genes in 25 species
Sub family
ORTHO003963   28 genes in 25 species
Comment
RNAname
Tc05_t005750
 
GeneName
Tc05_g005750
 
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0003676nucleic acid bindingC_Hunter118570.000141607
GO:0044424intracellular partC_Hunter117360.000800332
GO:0044424intracellular partC_Hunter216360.000406907
GO:0005488bindingC_Hunter3892370.0000000000573693
GO:0044464cell partC_Hunter3822260.00000000536724
GO:0044464cell partC_Hunter4632260.00000161416
GO:0005488bindingC_Hunter4682730.00000204317
GO:0003824catalytic activityC_Hunter4542660.000556415
InterPro domain(s)
Interpro idDescription
IPR013049 Spo11/DNA topoisomerase VI, subunit A, N-terminal
IPR002815 Spo11/DNA topoisomerase VI, subunit A
IPR004085 DNA topoisomerase VI, subunit A
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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