Gene Overview 
General information
- Gene id
- TC05G005080
- Species
- Theobroma cacao
- Transcript
- TC05G005080.1
- Coordinates
- 2713434 - 2716127
- Strand
- positive
- Chromosome
- Tc05
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000032 1498 genes in 25 species
- Sub family
- ORTHO000481 57 genes in 24 species
- Duplication type
- Block duplicate
- Comment
- RNAnameTc05_t005080GeneNameTc05_g005080transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0005488 binding C_Hunter 3 89 237 0.0000000000573693 GO:0044464 cell part C_Hunter 3 82 226 0.00000000536724 GO:0044464 cell part C_Hunter 4 63 226 0.00000161416 GO:0005488 binding C_Hunter 4 68 273 0.00000204317 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR005225 Small GTP-binding protein IPR020851 Small GTPase IPR006688 ADP-ribosylation factor IPR003579 Ras small GTPase, Rab type IPR003577 Ras small GTPase, Ras type IPR003578 Small GTPase, Rho type IPR002041 Ran GTPase IPR001806 Ras GTPase IPR013753 Ras IPR006762 Gtr1/RagA G protein