Gene Overview 
General information
- Gene id
- TC04G002130
- Species
- Theobroma cacao
- Transcript
- TC04G002130.1
- Coordinates
- 1325767 - 1328283
- Strand
- negative
- Chromosome
- Tc04
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000032 1498 genes in 25 species
- Sub family
- ORTHO000758 48 genes in 24 species
- Comment
- RNAnameTc04_t002130GeneNameTc04_g002130transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0005488 binding C_Hunter 3 72 218 0.0000274383 GO:0005488 binding C_Hunter 4 71 319 0.000338079 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR020851 Small GTPase IPR005225 Small GTP-binding protein IPR013753 Ras IPR006762 Gtr1/RagA G protein IPR003577 Ras small GTPase, Ras type IPR003579 Ras small GTPase, Rab type IPR003578 Small GTPase, Rho type IPR002041 Ran GTPase IPR001806 Ras GTPase