Gene Overview  


General information


Gene id
TC03G017540
Species
Theobroma cacao
Transcript
TC03G017540.1
Coordinates
17169926 - 17172854
Strand
negative
Chromosome
Tc03
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM005328   27 genes in 20 species
Comment
RNAname
Tc03_t017540
 
GeneName
Tc03_g017540
 
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0005488bindingC_Hunter3933000.0000048227
GO:0005488bindingC_Hunter4713080.0000273096
InterPro domain(s)
Interpro idDescription
IPR007624 RNA polymerase sigma-70 region 3
IPR007630 RNA polymerase sigma-70 region 4
IPR007627 RNA polymerase sigma-70 region 2
IPR013325 RNA polymerase sigma factor, region 2
IPR013324 RNA polymerase sigma factor, region 3/4
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding
IPR000943 RNA polymerase sigma-70 factor
IPR014284 RNA polymerase sigma-70
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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