Gene Overview 
General information
- Gene id
- TC02G007890
- Species
- Theobroma cacao
- Transcript
- TC02G007890.1
- Coordinates
- 4339590 - 4349341
- Strand
- negative
- Chromosome
- Tc02
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000618 164 genes in 24 species
- Sub family
- ORTHO005483 25 genes in 22 species
- Comment
- RNAnameTc02_t007890GeneNameTc02_g007890transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0005488 binding C_Hunter 3 74 193 0.00000000398064 GO:0008152 metabolic process C_Hunter 3 93 300 0.000000688939 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR018329 DNA helicase, ATP-dependent, RecQ type, N-terminal IPR004589 DNA helicase, ATP-dependent, RecQ type IPR001650 DNA/RNA helicase, C-terminal IPR018982 RQC domain IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal IPR002121 Helicase/RNase D C-terminal, HRDC domain IPR014001 DEAD-like helicase, N-terminal IPR014021 Helicase, superfamily 1/2, ATP-binding domain