Gene Overview  


General information


Gene id
TC02G000580
Species
Theobroma cacao
Transcript
TC02G000580.1
Coordinates
321221 - 333473
Strand
negative
Chromosome
Tc02
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000101   667 genes in 25 species
Sub family
ORTHO008176   22 genes in 18 species
Comment
RNAname
Tc02_t000580
 
GeneName
Tc02_g000580
 
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Toolbox


Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0009987cellular processC_Hunter3591460.0000000000447177
GO:0005488bindingC_Hunter3772100.000000019355
GO:0044464cell partC_Hunter3952940.000000182353
InterPro domain(s)
Interpro idDescription
IPR012287 Homeodomain-related
IPR000330 SNF2-related
IPR000953 Chromo domain
IPR001650 DNA/RNA helicase, C-terminal
IPR019787 Zinc finger, PHD-finger
IPR009463 Protein of unknown function DUF1087
IPR017877 MYB-like
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
IPR001965 Zinc finger, PHD-type
IPR014001 DEAD-like helicase, N-terminal
IPR011011 Zinc finger, FYVE/PHD-type
IPR016197 Chromo domain-like
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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