Gene Overview 
General information
- Gene id
- TC01G031530
- Species
- Theobroma cacao
- Transcript
- TC01G031530.1
- Coordinates
- 25888091 - 25892956
- Strand
- negative
- Chromosome
- Tc01
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000326 267 genes in 20 species
- Sub family
- ORTHO000032 195 genes in 20 species
- Duplication type
- Block duplicate
- Comment
- RNAnameTc01_t031530GeneNameTc01_g031530transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0044464 cell part C_Hunter 3 98 298 0.0000000259661 GO:0044238 primary metabolic process C_Hunter 3 59 234 0.0000995389 GO:0044464 cell part C_Hunter 4 81 323 0.00000220329 GO:0008152 metabolic process C_Hunter 4 72 321 0.00000259645 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR001764 Glycoside hydrolase, family 3, N-terminal IPR017853 Glycoside hydrolase, catalytic core IPR002772 Glycoside hydrolase, family 3, C-terminal