Gene Overview 
General information
- Gene id
- TC01G007080
- Species
- Theobroma cacao
- Transcript
- TC01G007080.1
- Coordinates
- 3918427 - 3919723
- Strand
- positive
- Chromosome
- Tc01
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000124 555 genes in 20 species
- Sub family
- ORTHO010060 19 genes in 13 species
- Duplication type
- Block duplicate
- Comment
- RNAnameTc01_t007080GeneNameTc01_g007080transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0044424 intracellular part C_Hunter 2 30 77 0.00000000474756 GO:0044464 cell part C_Hunter 3 110 288 0.00000000000000449841 GO:0005488 binding C_Hunter 3 95 261 0.0000000000651904 GO:0044464 cell part C_Hunter 3 96 283 0.0000000054805 GO:0044464 cell part C_Hunter 4 90 263 1.31279e-16 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR003106 Leucine zipper, homeobox-associated IPR001356 Homeobox IPR009057 Homeodomain-like IPR012287 Homeodomain-related