Gene Overview  


General information


Gene id
TC01G005460
Species
Theobroma cacao
Transcript
TC01G005460.1
Coordinates
2954706 - 2959183
Strand
negative
Chromosome
Tc01
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000172   423 genes in 25 species
Sub family
ORTHO000321   68 genes in 25 species
Duplication type
Block duplicate
Comment
RNAname
Tc01_t005460
 
GeneName
Tc01_g005460
 
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0005488bindingC_Hunter3952610.0000000000651904
GO:0005488bindingC_Hunter4703270.000793234
InterPro domain(s)
Interpro idDescription
IPR000504 RNA recognition motif, RNP-1
IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein
IPR012677 Nucleotide-binding, alpha-beta plait
IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
IPR003954 RNA recognition, domain 1
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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