Gene Overview 
General information
- Gene id
- TC01G002920
- Species
- Theobroma cacao
- Transcript
- TC01G002920.1
- Coordinates
- 1429502 - 1431600
- Strand
- positive
- Chromosome
- Tc01
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000069 899 genes in 24 species
- Duplication type
- Block duplicate
- Comment
- RNAnameTc01_t002920GeneNameTc01_g002920transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0003824 catalytic activity C_Hunter 1 30 61 0.0000110364 GO:0005488 binding C_Hunter 2 26 72 0.000530255 GO:0003824 catalytic activity C_Hunter 3 107 298 0.00000000000000581238 GO:0003824 catalytic activity C_Hunter 3 97 299 0.000000000522674 GO:0005488 binding C_Hunter 3 95 274 0.00000000207619 GO:0005488 binding C_Hunter 4 78 320 0.0000000819669 GO:0003824 catalytic activity C_Hunter 4 68 317 0.000000266828 GO:0005488 binding C_Hunter 4 70 327 0.000793234 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR001509 NAD-dependent epimerase/dehydratase IPR016040 NAD(P)-binding domain