Gene Overview 
General information
- Gene id
- PT19G02440
- Species
- Populus trichocarpa
- Transcript
- PT19G02440.1
- Coordinates
- 2443862 - 2445288
- Strand
- positive
- Chromosome
- scaffold_19
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000179 414 genes in 25 species
- Sub family
- ORTHO000050 159 genes in 24 species
- Duplication type
- Block duplicate
- Description
- PACid=17302769;name=POPTR_0019s02630;alias=pt010059m,estExt_Genewise1_v1.C_1850029,Pt-PEAC14.4;
- Comment
- transcripteqprotein_id17302769Protein informationCannot create amino acid sequence
- Gene structure
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0005515 protein binding C_Hunter 1 18 42 0.000105416 GO:0005515 protein binding C_Hunter 3 18 42 0.000105416 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR004001 Actin, conserved site IPR004000 Actin/actin-like IPR020902 Actin/actin-like conserved site