Gene Overview 
General information
- Gene id
- PT18G08810
- Species
- Populus trichocarpa
- Transcript
- PT18G08810.1
- Coordinates
- 10818812 - 10825587
- Strand
- negative
- Chromosome
- scaffold_18
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM001318 88 genes in 25 species
- Sub family
- ORTHO001445 38 genes in 24 species
- Duplication type
- Tandem duplicate and Block duplicate
- Description
- PACid=17322345;name=POPTR_0018s09760;alias=pt008359m;
- Comment
- transcripteqprotein_id17322345Protein informationCannot create amino acid sequence
- Gene structure
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0006430 lysyl-tRNA aminoacylation C_Hunter 1 2 3 0.000910025 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR018149 Lysyl-tRNA synthetase, class II, C-terminal IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type IPR002313 Lysyl-tRNA synthetase, class II IPR016027 Nucleic acid-binding, OB-fold-like IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain IPR012340 Nucleic acid-binding, OB-fold