Gene Overview 
General information
- Gene id
- PT06G16640
- Species
- Populus trichocarpa
- Transcript
- PT06G16640.1
- Coordinates
- 16279129 - 16285038
- Strand
- negative
- Chromosome
- scaffold_6
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM001318 88 genes in 25 species
- Sub family
- ORTHO001445 38 genes in 24 species
- Duplication type
- Block duplicate
- Description
- PACid=17341456;name=POPTR_0006s17970;alias=pt017342m,estExt_Genewise1_v1.C_1210133;
- Comment
- transcripteqprotein_id17341456Protein informationCannot create amino acid sequence
- Gene structure
-
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR018149 Lysyl-tRNA synthetase, class II, C-terminal IPR002313 Lysyl-tRNA synthetase, class II IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like IPR012340 Nucleic acid-binding, OB-fold IPR016027 Nucleic acid-binding, OB-fold-like IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) IPR006195 Aminoacyl-tRNA synthetase, class II, conserved domain