Gene Overview 
General information
- Gene id
- OS04G39444
- Species
- Oryza sativa ssp. japonica
- Transcript
- OS04G39444.1
- Coordinates
- 23312379 - 23314097
- Strand
- negative
- Chromosome
- 4
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM002866 45 genes in 23 species
- Sub family
- ORTHO001925 34 genes in 22 species
- Duplication type
- Block duplicate
- Description
- LSM domain containing protein, expressed
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0044464 cell part C_Hunter 3 140 299 0.000206733 GO:0016020 membrane C_Hunter 4 32 249 0.000104254 GO:0044464 cell part C_Hunter 4 114 314 0.000500357 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR001163 Like-Sm ribonucleoprotein (LSM) domain IPR010920 Like-Sm ribonucleoprotein (LSM)-related domain IPR006649 Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type