Gene Overview 
General information
- Gene id
- MT3G106180
- Species
- Medicago truncatula
- Transcript
- MT3G106180.1
- Coordinates
- 37555017 - 37555844
- Strand
- positive
- Chromosome
- 3
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000310 273 genes in 25 species
- Sub family
- ORTHO000593 53 genes in 25 species
- Duplication type
- Block duplicate
- Description
- Ribonuclease CAF1 (Fragment) (AHRD V1 ***- B3VZE6_POPTN); contains Interpro domain(s) IPR006941 Ribonuclease CAF1
- Comment
- transcripteqProtein idMedtr3g106180.1Protein informationCannot create amino acid sequence
- Gene structure
-
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0044464 cell part C_Hunter 3 81 287 0.0000019372 GO:0044464 cell part C_Hunter 4 62 318 0.0000238462 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR012337 Polynucleotidyl transferase, ribonuclease H fold IPR006941 Ribonuclease CAF1