Gene Overview 
General information
- Gene id
- MT1G013740
- Species
- Medicago truncatula
- Transcript
- MT1G013740.1
- Coordinates
- 3503084 - 3507036
- Strand
- positive
- Chromosome
- 1
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000070 895 genes in 20 species
- Sub family
- ORTHO024423 5 genes in 3 species
- Duplication type
- Tandem duplicate
- Description
- Polygalacturonase (Fragment) (AHRD V1 *-** Q5D4T0_PSIGU); contains Interpro domain(s) IPR012334 Pectin lyase fold
- Comment
- transcripteqProtein idMedtr1g013740.1Protein informationCannot create amino acid sequence
- Gene structure
-
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- InterPro domain(s)
-
View InterPro domain(s) mappingInterpro id Description IPR006626 Parallel beta-helix repeat IPR012334 Pectin lyase fold IPR011050 Pectin lyase fold/virulence factor IPR000743 Glycoside hydrolase, family 28