Gene Overview  


General information


Gene id
LJ1G033040
Species
Lotus japonicus
Transcript
LJ1G033040.1
Coordinates
51330978 - 51334595
Strand
negative
Chromosome
chr1
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM001089   104 genes in 25 species
Sub family
ORTHO001774   35 genes in 25 species
Comment
transcript
eq
 
scaffold
CM0017
 
name
chr1.CM0017.250.nc
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0044444cytoplasmic partC_Hunter116570.000494796
GO:0044444cytoplasmic partC_Hunter214450.0000418361
GO:0044444cytoplasmic partC_Hunter316570.000494796
GO:0044444cytoplasmic partC_Hunter414450.0000418361
InterPro domain(s)
Interpro idDescription
IPR014284 RNA polymerase sigma-70
IPR016262 RNA polymerase sigma factor, SigB/SigC/SigD, plastid
IPR011991 Winged helix-turn-helix transcription repressor DNA-binding
IPR013325 RNA polymerase sigma factor, region 2
IPR013324 RNA polymerase sigma factor, region 3/4
IPR007630 RNA polymerase sigma-70 region 4
IPR007624 RNA polymerase sigma-70 region 3
IPR007627 RNA polymerase sigma-70 region 2
IPR009042 RNA polymerase sigma-70 region 1.2
IPR000943 RNA polymerase sigma-70 factor
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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