Gene Overview  


General information


Gene id
AT5G44800
Species
Arabidopsis thaliana
Transcript
AT5G44800.1
Coordinates
18083659 - 18092162
Strand
negative
Chromosome
5
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000101   667 genes in 25 species
Sub family
ORTHO008176   22 genes in 18 species
Duplication type
Block duplicate
Description
chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink).;chromatin remodeling 4
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR000330 SNF2-related
IPR000953 Chromo domain
IPR001650 DNA/RNA helicase, C-terminal
IPR019787 Zinc finger, PHD-finger
IPR009463 Protein of unknown function DUF1087
IPR012287 Homeodomain-related
IPR011011 Zinc finger, FYVE/PHD-type
IPR016197 Chromo domain-like
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
IPR001965 Zinc finger, PHD-type
IPR014001 DEAD-like helicase, N-terminal
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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