Gene Overview  


General information


Gene id
AT5G42820
Species
Arabidopsis thaliana
Transcript
AT5G42820.2
Coordinates
17170445 - 17171296
Strand
negative
Chromosome
5
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM001116   101 genes in 25 species
Sub family
ORTHO000776   47 genes in 25 species
Description
U2 auxiliary factor small subunit. The atU2AF35b protein and its homolog, atU2AF35a, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.;Zinc finger C-x8-C-x5-C-x3-H type family protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR012677 Nucleotide-binding, alpha-beta plait
IPR000571 Zinc finger, CCCH-type
IPR009145 U2 auxiliary factor small subunit
IPR000504 RNA recognition motif, RNP-1
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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