Gene Overview  


General information


Gene id
AT5G39550
Species
Arabidopsis thaliana
Transcript
AT5G39550.1
Coordinates
15837408 - 15840503
Strand
negative
Chromosome
5
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM001852   66 genes in 21 species
Sub family
ORTHO000933   44 genes in 21 species
Description
Encodes the VIM3/ORTH1 protein that is similar to VIM1. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. This protein functions as an E3 ubiquitin ligase in vitro with members of the UBC8 family E2s. Either of the two RING domains present in the protein can promote ubiquitylation in vitro, but, not the PHD domain. Over-expression of ORTH1/VIM3 leads to decreased levels of FWA methylation, increased levels of FWA transcripts, and delayed flowering. Cen180 repeats are also hypomethylated in plants overexpressing this protein.;Zinc finger (C3HC4-type RING finger) family protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR001841 Zinc finger, RING-type
IPR003105 SRA-YDG
IPR011011 Zinc finger, FYVE/PHD-type
IPR019786 Zinc finger, PHD-type, conserved site
IPR001965 Zinc finger, PHD-type
IPR018957 Zinc finger, C3HC4 RING-type
IPR017907 Zinc finger, RING-type, conserved site
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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