Gene Overview 
General information
- Gene id
- AT5G39300
- Species
- Arabidopsis thaliana
- Transcript
- AT5G39300.1
- Coordinates
- 15737427 - 15738387
- Strand
- negative
- Chromosome
- 5
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000065 916 genes in 22 species
- Sub family
- ORTHO005823 25 genes in 12 species
- Duplication type
- Tandem duplicate
- Description
- member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio);expansin A25
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0009664 plant-type cell wall organization C_Hunter 1 6 6 0.00000000000167783 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR005132 Rare lipoprotein A IPR007117 Pollen allergen/expansin, C-terminal IPR014734 Pollen allergen, N-terminal IPR009009 Barwin-related endoglucanase IPR002963 Expansin IPR007118 Expansin/Lol pI IPR007112 Expansin 45, endoglucanase-like