Gene Overview  


General information


Gene id
AT5G13860
Species
Arabidopsis thaliana
Transcript
AT5G13860.1
Coordinates
4473212 - 4474318
Strand
negative
Chromosome
5
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM002787   46 genes in 24 species
Sub family
ORTHO002442   32 genes in 24 species
Description
ELCH-like (ELC-Like); FUNCTIONS IN: small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, protein modification process, protein transport, post-translational protein modification; LOCATED IN: ESCRT I complex; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Tumour susceptibility gene 101 (InterPro:IPR008883), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), Steadiness box (InterPro:IPR017916); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme/RWD-like protein (TAIR:AT3G12400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;ELCH-like
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0044464cell partC_Hunter41302250.0000335911
InterPro domain(s)
Interpro idDescription
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
IPR008883 Tumour susceptibility gene 101
IPR017916 Steadiness box
IPR000608 Ubiquitin-conjugating enzyme, E2
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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