Gene Overview 
General information
- Gene id
- AT5G13120
- Species
- Arabidopsis thaliana
- Transcript
- AT5G13120.1
- Coordinates
- 4162714 - 4164720
- Strand
- negative
- Chromosome
- 5
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000111 603 genes in 25 species
- Sub family
- ORTHO004543 27 genes in 21 species
- Description
- Encodes a lumenal cyclophilin with peptidyl-prolyl isomerase activity that is associated with the NAD(P)H dehydrogenase complex in stromal regions of the thylakoid membrane. It is likely to be important for the accumulation of the hydrophobic domain of the NAD(P)H dehydrogenase complex. This complex is associated with PSI and is responsible for the reduction of plastoquinone.;cyclophilin 20-2
- Comment
- transcripteqProtein information
- Gene structure
-
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- InterPro domain(s)
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Interpro id Description IPR002130 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type IPR020892 Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site IPR015891 Cyclophilin-like