Gene Overview  


General information


Gene id
AT5G09280
Species
Arabidopsis thaliana
Transcript
AT5G09280.1
Coordinates
2880423 - 2881597
Strand
negative
Chromosome
5
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000163   439 genes in 20 species
Sub family
ORTHO001877   35 genes in 17 species
Description
Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G30350.1); Has 1558 Blast hits to 1550 proteins in 258 species: Archae - 0; Bacteria - 650; Metazoa - 0; Fungi - 219; Plants - 684; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;Pectin lyase-like superfamily protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR006626 Parallel beta-helix repeat
IPR002022 Pectate lyase/Amb allergen
IPR011050 Pectin lyase fold/virulence factor
IPR012334 Pectin lyase fold
IPR018082 AmbAllergen
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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