Gene Overview  


General information


Gene id
AT5G08560
Species
Arabidopsis thaliana
Transcript
AT5G08560.1
Coordinates
2771104 - 2773827
Strand
negative
Chromosome
5
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM001955   63 genes in 22 species
Sub family
ORTHO003528   29 genes in 19 species
Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Toolbox


Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0005488bindingC_Hunter31252910.000471613
InterPro domain(s)
Interpro idDescription
IPR017986 WD40-repeat-containing domain
IPR020472 G-protein beta WD-40 repeat, region
IPR006595 CTLH, C-terminal LisH motif
IPR011046 WD40 repeat-like-containing domain
IPR006594 LisH dimerisation motif
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain
IPR019782 WD40 repeat 2
IPR019775 WD40 repeat, conserved site
IPR019781 WD40 repeat, subgroup
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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