Gene Overview  


General information


Gene id
AT5G07400
Species
Arabidopsis thaliana
Transcript
AT5G07400.1
Coordinates
2340814 - 2345321
Strand
positive
Chromosome
5
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM006064   23 genes in 17 species
Description
forkhead-associated domain-containing protein / FHA domain-containing protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: F mature embryo stage; CONTAINS InterPro DOMAIN/s: Tyrosyl-DNA phosphodiesterase (InterPro:IPR010347), SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253), HIP116, Rad5p N-terminal (InterPro:IPR014905); BEST Arabidopsis thaliana protein match is: tyrosyl-DNA phosphodiesterase-related (TAIR:AT5G15170.1); Has 394 Blast hits to 361 proteins in 119 species: Archae - 0; Bacteria - 2; Metazoa - 165; Fungi - 89; Plants - 76; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).;forkhead-associated domain-containing protein / FHA domain-containing protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Toolbox


Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0005488bindingC_Hunter31252910.000471613
InterPro domain(s)
Interpro idDescription
IPR000253 Forkhead-associated
IPR010347 Tyrosyl-DNA phosphodiesterase
IPR014905 HIP116, Rad5p N-terminal
IPR008984 SMAD/FHA domain
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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