Gene Overview  


General information


Gene id
AT4G31900
Species
Arabidopsis thaliana
Transcript
AT4G31900.1
Coordinates
15431528 - 15438443
Strand
positive
Chromosome
4
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000101   667 genes in 25 species
Sub family
ORTHO003443   29 genes in 22 species
Duplication type
Block duplicate
Description
PICKLE RELATED 2 (PKR2); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 19383 Blast hits to 16625 proteins in 2121 species: Archae - 158; Bacteria - 5872; Metazoa - 3841; Fungi - 4162; Plants - 1629; Viruses - 186; Other Eukaryotes - 3535 (source: NCBI BLink).;chromatin remodeling factor, putative
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR000953 Chromo domain
IPR014001 DEAD-like helicase, N-terminal
IPR001650 DNA/RNA helicase, C-terminal
IPR016197 Chromo domain-like
IPR000330 SNF2-related
IPR009462 Protein of unknown function DUF1086
IPR009463 Protein of unknown function DUF1087
IPR021006 Histone deacetylase complex, subunit 2/3
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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