Gene Overview 
General information
- Gene id
- AT4G23820
- Species
- Arabidopsis thaliana
- Transcript
- AT4G23820.1
- Coordinates
- 12397217 - 12400050
- Strand
- negative
- Chromosome
- 4
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000297 282 genes in 21 species
- Sub family
- ORTHO010296 19 genes in 16 species
- Duplication type
- Block duplicate
- Description
- Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G41870.1); Has 4183 Blast hits to 4168 proteins in 506 species: Archae - 6; Bacteria - 1472; Metazoa - 14; Fungi - 1146; Plants - 1414; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).;Pectin lyase-like superfamily protein
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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- ....the multiple sequence alignment of the homologous gene family.
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Functional annotation information
- GO term(s)
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- InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR006626 Parallel beta-helix repeat IPR011050 Pectin lyase fold/virulence factor IPR012334 Pectin lyase fold IPR000743 Glycoside hydrolase, family 28