Gene Overview  


General information


Gene id
AT4G23820
Species
Arabidopsis thaliana
Transcript
AT4G23820.1
Coordinates
12397217 - 12400050
Strand
negative
Chromosome
4
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000297   282 genes in 21 species
Sub family
ORTHO010296   19 genes in 16 species
Duplication type
Block duplicate
Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G41870.1); Has 4183 Blast hits to 4168 proteins in 506 species: Archae - 6; Bacteria - 1472; Metazoa - 14; Fungi - 1146; Plants - 1414; Viruses - 0; Other Eukaryotes - 131 (source: NCBI BLink).;Pectin lyase-like superfamily protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

Loading...please wait

Functional annotation information


GO term(s)
Loading....please wait
InterPro domain(s)
Interpro idDescription
IPR006626 Parallel beta-helix repeat
IPR011050 Pectin lyase fold/virulence factor
IPR012334 Pectin lyase fold
IPR000743 Glycoside hydrolase, family 28
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


No linkout data found