Gene Overview  


General information


Gene id
AT4G23250
Species
Arabidopsis thaliana
Transcript
AT4G23250.1
Coordinates
12162004 - 12167026
Strand
negative
Chromosome
4
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000006   3414 genes in 20 species
Sub family
ORTHO005595   25 genes in 2 species
Duplication type
Tandem duplicate   and   Block duplicate
Description
EMBRYO DEFECTIVE 1290 (EMB1290); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (TAIR:AT4G23260.1); Has 121653 Blast hits to 119053 proteins in 4422 species: Archae - 98; Bacteria - 13672; Metazoa - 43987; Fungi - 10320; Plants - 35330; Viruses - 426; Other Eukaryotes - 17820 (source: NCBI BLink).;kinases;protein kinases
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0012501programmed cell deathC_Hunter118221.12588e-30
GO:0012501programmed cell deathC_Hunter318221.12588e-30
InterPro domain(s)
Interpro idDescription
IPR011009 Protein kinase-like domain
IPR008985 Concanavalin A-like lectin/glucanase
IPR000719 Protein kinase, catalytic domain
IPR002902 Protein of unknown function DUF26
IPR001245 Serine/threonine/tyrosine-protein kinase
IPR002290 Serine/threonine-protein kinase domain
IPR020635 Tyrosine-protein kinase, catalytic domain
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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