Gene Overview  


General information


Gene id
AT4G15420
Species
Arabidopsis thaliana
Transcript
AT4G15420.1
Coordinates
8823822 - 8825949
Strand
positive
Chromosome
4
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM006084   23 genes in 19 species
Sub family
ORTHO009715   20 genes in 17 species
Description
Ubiquitin fusion degradation UFD1 family protein; FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: proteolysis, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Peptidase, C-terminal, archaeal/bacterial (InterPro:IPR007280), Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT2G29070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ubiquitin fusion degradation UFD1 family protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0003824catalytic activityC_Hunter130420.00000039317
GO:0003824catalytic activityC_Hunter334490.0000000627333
InterPro domain(s)
Interpro idDescription
IPR004854 Ubiquitin fusion degradation protein UFD1
IPR015880 Zinc finger, C2H2-like
IPR007280 Peptidase, C-terminal, archaeal/bacterial
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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