Gene Overview 
General information
- Gene id
- AT4G08180
- Species
- Arabidopsis thaliana
- Transcript
- AT4G08180.1
- Coordinates
- 5169727 - 5173360
- Strand
- positive
- Chromosome
- 4
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000499 196 genes in 25 species
- Sub family
- ORTHO000173 87 genes in 20 species
- Description
- OSBP(oxysterol binding protein)-related protein 1C (ORP1C); FUNCTIONS IN: phosphoinositide binding, oxysterol binding; INVOLVED IN: steroid metabolic process, signal transduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1A (TAIR:AT2G31020.1); Has 2760 Blast hits to 2567 proteins in 218 species: Archae - 0; Bacteria - 4; Metazoa - 1466; Fungi - 697; Plants - 301; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).;OSBP(oxysterol binding protein)-related protein 1C
- Comment
- transcripteqProtein information
- Gene structure
-
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- InterPro domain(s)
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Interpro id Description IPR001849 Pleckstrin homology IPR000648 Oxysterol-binding protein IPR011993 Pleckstrin homology-type