Gene Overview  


General information


Gene id
AT4G04940
Species
Arabidopsis thaliana
Transcript
AT4G04940.1
Coordinates
2511212 - 2517052
Strand
negative
Chromosome
4
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM004111   33 genes in 24 species
Sub family
ORTHO004585   27 genes in 24 species
Description
transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;transducin family protein / WD-40 repeat family protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

Loading...please wait

Functional annotation information


GO term(s)
Loading....please wait
InterPro domain(s)
Interpro idDescription
IPR017986 WD40-repeat-containing domain
IPR011046 WD40 repeat-like-containing domain
IPR001680 WD40 repeat
IPR015943 WD40/YVTN repeat-like-containing domain
IPR019782 WD40 repeat 2
IPR019775 WD40 repeat, conserved site
IPR007319 Small-subunit processome, Utp21
IPR019781 WD40 repeat, subgroup
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


No linkout data found