Gene Overview 
General information
- Gene id
- AT3G49620
- Species
- Arabidopsis thaliana
- Transcript
- AT3G49620.1
- Coordinates
- 18393823 - 18396662
- Strand
- positive
- Chromosome
- 3
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000011 2401 genes in 25 species
- Sub family
- ORTHO031695 3 genes in 2 species
- Duplication type
- Tandem duplicate
- Description
- encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.;2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
- Comment
- transcripteqProtein information
- Gene structure
-
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- InterPro domain(s)
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Interpro id Description IPR002283 Isopenicillin N synthase IPR005123 Oxoglutarate/iron-dependent oxygenase