Gene Overview  


General information


Gene id
AT3G16820
Species
Arabidopsis thaliana
Transcript
AT3G16820.1
Coordinates
5728016 - 5729174
Strand
negative
Chromosome
3
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000209   361 genes in 2 species
Sub family
ORTHO031240   3 genes in 2 species
Duplication type
Tandem duplicate   and   Block duplicate
Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G16740.1); Has 1146 Blast hits to 944 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1146; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;F-box and associated interaction domains-containing protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0009719response to endogenous stimulusC_Hunter123630.00000000000901532
GO:0019005SCF ubiquitin ligase complexC_Hunter3232096.32044e-20
InterPro domain(s)
Interpro idDescription
IPR001810 Cyclin-like F-box
IPR006527 F-box associated domain, type 1
IPR017451 F-box associated interaction domain
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


No linkout data found