Gene Overview 
General information
- Gene id
- AT2G47940
- Species
- Arabidopsis thaliana
- Transcript
- AT2G47940.1
- Coordinates
- 19618372 - 19622164
- Strand
- negative
- Chromosome
- 2
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000745 145 genes in 25 species
- Sub family
- ORTHO009098 20 genes in 17 species
- Description
- Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product.;DEGP protease 2
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0044446 intracellular organelle part C_Hunter 2 20 66 0.000244211 GO:0044446 intracellular organelle part C_Hunter 4 20 66 0.000244211 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR001940 Peptidase S1C, HrtA/DegP2/Q/S IPR015724 Serine endopeptidase DegP2 IPR009003 Serine/cysteine peptidase, trypsin-like IPR001478 PDZ/DHR/GLGF IPR001254 Peptidase S1/S6, chymotrypsin/Hap