Gene Overview 
General information
- Gene id
- AT2G27040
- Species
- Arabidopsis thaliana
- Transcript
- AT2G27040.1
- Coordinates
- 11536795 - 11541503
- Strand
- negative
- Chromosome
- 2
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000200 367 genes in 23 species
- Sub family
- ORTHO000306 70 genes in 20 species
- Description
- AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.;Argonaute family protein
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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- ...the colinearity of this gene with other genomes.
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View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
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- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0044464 cell part C_Hunter 2 30 37 0.000883308 GO:0044464 cell part C_Hunter 4 56 77 0.00000466314 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR012337 Polynucleotidyl transferase, ribonuclease H fold IPR003100 Argonaute/Dicer protein, PAZ IPR014811 Domain of unknown function DUF1785 IPR003165 Stem cell self-renewal protein Piwi