Gene Overview  


General information


Gene id
AT2G25170
Species
Arabidopsis thaliana
Transcript
AT2G25170.1
Coordinates
10714411 - 10723763
Strand
positive
Chromosome
2
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM000101   667 genes in 25 species
Sub family
ORTHO003443   29 genes in 22 species
Duplication type
Block duplicate
Description
Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.;chromatin remodeling factor CHD3 (PICKLE)
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR001650 DNA/RNA helicase, C-terminal
IPR016197 Chromo domain-like
IPR011011 Zinc finger, FYVE/PHD-type
IPR019786 Zinc finger, PHD-type, conserved site
IPR019787 Zinc finger, PHD-finger
IPR009462 Protein of unknown function DUF1086
IPR000953 Chromo domain
IPR000330 SNF2-related
IPR009463 Protein of unknown function DUF1087
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
IPR001841 Zinc finger, RING-type
IPR001965 Zinc finger, PHD-type
IPR014001 DEAD-like helicase, N-terminal
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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