Gene Overview 
General information
- Gene id
- AT1G79440
- Species
- Arabidopsis thaliana
- Transcript
- AT1G79440.1
- Coordinates
- 29882525 - 29887275
- Strand
- negative
- Chromosome
- 1
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000143 493 genes in 25 species
- Sub family
- ORTHO003806 28 genes in 22 species
- Description
- Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).;aldehyde dehydrogenase 5F1
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
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- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
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- Functional clusters
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GO term Description Type Experiment Cluster size Number of genes E-value GO:0044464 cell part C_Hunter 4 90 143 0.00000768246 - InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR016160 Aldehyde dehydrogenase, conserved site IPR016162 Aldehyde dehydrogenase, N-terminal IPR015590 Aldehyde dehydrogenase IPR016161 Aldehyde/histidinol dehydrogenase IPR010102 Succinic semialdehyde dehydrogenase