Gene Overview  


General information


Gene id
AT1G66050
Species
Arabidopsis thaliana
Transcript
AT1G66050.1
Coordinates
24589534 - 24592616
Strand
positive
Chromosome
1
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM001852   66 genes in 21 species
Sub family
ORTHO000933   44 genes in 21 species
Duplication type
Tandem duplicate
Description
Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.;Zinc finger (C3HC4-type RING finger) family protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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Functional clusters
GO termDescriptionTypeExperimentCluster sizeNumber of genesE-value
GO:0016567protein ubiquitinationC_Hunter310770.00000916792
InterPro domain(s)
Interpro idDescription
IPR001841 Zinc finger, RING-type
IPR003105 SRA-YDG
IPR011011 Zinc finger, FYVE/PHD-type
IPR019786 Zinc finger, PHD-type, conserved site
IPR001965 Zinc finger, PHD-type
IPR018957 Zinc finger, C3HC4 RING-type
IPR017907 Zinc finger, RING-type, conserved site
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


No linkout data found