Gene Overview 
General information
- Gene id
- AT1G55020
- Species
- Arabidopsis thaliana
- Transcript
- AT1G55020.1
- Coordinates
- 20525798 - 20530143
- Strand
- positive
- Chromosome
- 1
- Type
- Coding gene
- Sequence
- Show sequence(s)
- Gene family
- HOM000181 407 genes in 23 species
- Sub family
- ORTHO000011 294 genes in 23 species
- Description
- lipoxygenase, a defense gene conferring resistance Xanthomonas campestris;lipoxygenase 1
- Comment
- transcripteqProtein informationCannot create amino acid sequence
- Gene structure
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Toolbox
Explore
- ...the colinearity of this gene with other genomes.
- ...the local gene organization for homologous genes.
- ...the phylogenetic tree of the homologous gene family.
- ...the orthologous genes using the Integrative Orthology Viewer.
View
- ....the multiple sequence alignment of the homologous gene family.
- ...BLAST hits against the PLAZA database.
- ...BLAST hits against NCBI's protein database.
- ...the gene in the 'Genomeview' or in the 'AnnoJ' genome browser.
- ...all colinear gene pairs.
Functional annotation information
- GO term(s)
-
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- InterPro domain(s)
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View InterPro domain(s) mappingInterpro id Description IPR001024 Lipoxygenase, LH2 IPR013819 Lipoxygenase, C-terminal IPR001246 Lipoxygenase, plant IPR008976 Lipase/lipooxygenase, PLAT/LH2 IPR020833 Lipoxygenase, iron binding site IPR000907 Lipoxygenase IPR020834 Lipoxygenase, conserved site