Gene Overview  


General information


Gene id
AT1G29630
Species
Arabidopsis thaliana
Transcript
AT1G29630.2
Coordinates
10349587 - 10353538
Strand
positive
Chromosome
1
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM002172   58 genes in 24 species
Sub family
ORTHO006270   24 genes in 22 species
Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G18090.2); Has 2407 Blast hits to 2171 proteins in 377 species: Archae - 277; Bacteria - 0; Metazoa - 635; Fungi - 677; Plants - 227; Viruses - 36; Other Eukaryotes - 555 (source: NCBI BLink).;5'-3' exonuclease family protein
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR006084 DNA repair protein (XPGC)/yeast Rad
IPR006085 XPG N-terminal
IPR006086 XPG/RAD2 endonuclease
IPR008918 Helix-hairpin-helix motif, class 2
IPR020045 5'-3' exonuclease, C-terminal subdomain
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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