Gene Overview  


General information


Gene id
AT1G27650
Species
Arabidopsis thaliana
Transcript
AT1G27650.1
Coordinates
9615152 - 9616042
Strand
positive
Chromosome
1
Type
Coding gene
Sequence
Show sequence(s)
Gene family
HOM001116   101 genes in 25 species
Sub family
ORTHO000776   47 genes in 25 species
Description
U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions.;U2 snRNP auxiliary factor small subunit, putative
Comment
transcript
eq
 
Protein information
Cannot create amino acid sequence
 
Gene structure

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Functional annotation information


GO term(s)
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InterPro domain(s)
Interpro idDescription
IPR000571 Zinc finger, CCCH-type
IPR000504 RNA recognition motif, RNP-1
IPR012677 Nucleotide-binding, alpha-beta plait
IPR003954 RNA recognition, domain 1
IPR009145 U2 auxiliary factor small subunit
View InterPro domain(s) mapping

Gene ids in other PLAZA versions


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